PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G034400.3
Common NameB456_007G034400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 200aa    MW: 21121.4 Da    PI: 5.8816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G034400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.67.9e-07166192430
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                         +h+ +Er RR+ri +++  L++l+P +
  Gorai.007G034400.3 166 SHSLAERARRERISERMKILQDLVPGC 192
                         8************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-8160194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-5160194No hitNo description
PROSITE profilePS5088811.331162199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-8165193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-4166192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDPPLINESS FSAANPSAYS LAEIWPFPIN PGSDPTAVTG GGLGLRIGNL GGFGETSGLR  60
DGSMEESTVT EQSVGCGGGR KRKELSSEDE SSKIVSTTTS ANELNDSDGK RMKTPVSKNG  120
NTGSKEAEVE ASSADGSKPD KNSKPAEPPK QDYIHVRARR GQATDSHSLA ERARRERISE  180
RMKILQDLVP GCNKVFIVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.27650.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7793370.0AY779337.1 Gossypium hirsutum bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488874.11e-140PREDICTED: transcription factor bHLH79 isoform X2
SwissprotQ9LV171e-52BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A0D2S5Y81e-144A0A0D2S5Y8_G
STRINGVIT_17s0000g05370.t014e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.14e-45bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]